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Table One, Wilson

Table 1. A listing of the examples in the text as well as in Wilson et al. (2002). The resulting alignment and coded differences based on the recommendations provided are also shown. Examples 7-9, 12, 17, and 20-22 are discussed in Wilson et al. (2002).

Example Number and CRS Positions	Example Sequence and CRS	Recommended Alignment	Recorded Differences
1 488-504	ATACAACCCCCACCCAT ATACAACCCCCGCCCAT	ATACAACCCCCACCCAT ATACAACCCCCGCCCAT	499A
2 488-504	ATACAACCCCACCCAT ATACAACCCCCGCCCAT	ATACAACCCC-ACCCAT ATACAACCCCCGCCCAT	498D, 499A
3 244-253	ATTGATGTC ATTGAATGTC	ATTGA-TGTC ATTGAATGTC	249D
4 280-294	CATAACAAAATTT CATAACAAAAAATTT	CATAACAAAA--TTT CATAACAAAAAATTT	290D, 291D
5 508-529	ACCCAGCACACACACACACCGCTG ACCCAGCACACACACACCGCTG	ACCCAGCACACACACACACCGCTG ACCCAGCACACACACAC--CGCTG	524.1A, 524.2C
6 508-529	ACCCAGCACACACCGCTGC ACCCAGCACACACACACCGCTGC	ACCCAGCACACAC----CGCTGC ACCCAGCACACACACACCGCTGC	521D, 522D, 523D, 524D
7 508-529	ACCCAACACACACACCGC ACCCAGCACACACACACCGC	ACCCA--ACACACACACCGC ACCCAGCACACACACACCGC	513D, 514D
8 508-529	ACCCAGTACACACACCG ACCCAGCACACACACACCG	ACCCAGTACACACAC--CG ACCCAGCACACACACACCG	514T, 523D, 524D
9 16180-16198	AAACCCCCCCCTCCCATGCT AAAACCCCCTCCCCATGCT	AAACCCCCCCCTCCCATGCT AAAACCCCCTC-CCCATGCT	16183C, 16189C, 16190.1T
10 16180-16198	AACCCCCCCCCCCCATGCT AAAACCCCCTCCCCATGCT	AACCCCCCCCCCCCATGCT AAAACCCCCTCCCCATGCT	16182C, 16183C, 16189C
11 16180-16198	AAACCCCCCCCCCCCATGCT AAAACCCCCTCCCCATGCT	AAACCCCCCCCCCCCATGCT AAAACCCCCTCCCC-ATGCT	16183C, 16189C, 16193.1C
12 16178-16198	TTAACCCCCTCCCCCATGCT TCAAAACCCCCTCCCCATGCT	TTAA--CCCCCTCCCCCATGCT TCAAAACCCCCTCCCC-ATGCT	16179T, 16182D, 16183D, 16193.1C
13 16180-16198	AAAACCTCCCCCCATGCT AAAACCCCCTCCCCATGCT	AAAACCTCC-CCCCATGCT AAAACCCCCTCCCCATGCT	16186T, 16189D
14 16176-16198	AAACCCCCCCTCCCCCATGT AAAACCCCCTCCCCATGT	CATCAAACCCCCCCTCCCCCATGCT CATCAAAACCCCC-TCCCC-ATGCT	16183C, 16188.1C, 16193.1C
15 16178-16198	TTAAACCCCCCCCTCCCATGCT TCAAAACCCCCTCCCCATGCT	TTAAACCCCCCCCTCCCATGCT TCAAAACCCCCTC-CCCATGCT	16179T, 16183C, 16189C, 16190.1T
16 16180-16198	AAACCCCCTCCCCCCATGCT AAAACCCCCTCCCCATGCT	AAA-CCCCCTCCCCCCATGCT AAAACCCCCTCCCC--ATGCT	16183D, 16193.1C, 16193.2C
17 300-317	AAACCCCCCCCCGC AAACCCCCCCTCCCCCGC	AAACCCCCCC----CCGC AAACCCCCCCTCCCCCGC	310D, 311D, 312D, 313D
18 300-317	AAACCCCCCTCCCCCCGC AAACCCCCCCTCCCCCGC	AAACCCCCC-TCCCCCCGC AAACCCCCCCTCCCCC-GC	309D, 315.1C
19 300-317	AAACCCCCCCTTCCCCCCGC AAACCCCCCCTCCCCCGC	AAACCCCCCCTTCCCCCCGC AAACCCCCCCT-CCCCC-GC	310.1T, 315.1C
20 461-476	AAAGACACCCCCCCCC AAAGACACCCCCCACA	AAAGACACCCCCCCCCCCCACA AAAGACACCCCCC------ACA	573.1–573.6C
21 98-114	CTGGAGCACCC CTGGAGCCGGAGCACCC	CTGGAGC------ACCC CTGGAGCCGGAGCACCC	105-110D
22 93-114	AGATCCTGGAGCCCCC AGACGCTGGAGCCGGAGCACCC	AGATC-CTGGAGCC------CCC AGA-CGCTGGAGCCGGAGCACCC	95.1T, 97D, 106-111D

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01.03.11

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Table One, Wilson

Example Sequence and CRS

Recommended Alignment

Recorded Differences